Collaborator guide

How to use the FRED

A short, plain-language tour of every feature and how to use it. The hub is a shared, live board where a finding becomes a structured study — captured, cited, discussed, and moved toward a decision. No install; it runs in the browser and syncs for everyone.

CaptureEvidenceDiscussPromoteDecision

⏱️ Your first 5 minutes

New here? Do these five things and you'll understand the whole board.

  1. Get in. On the landing page, enter the collaboration keyword (e.g. forebio). Don't have it? Ask Hugh — hdonatello@Fore.bio.
  2. Set your name (top-right, 👤). It tags your studies and comments, and shows your live presence to others.
  3. Filter to your lane. Use the search box or status filters to find the studies in your area (biology, chemistry, computational, clinical).
  4. Open two cards and drop a comment on each — what to tackle first, and what evidence is missing.
  5. Capture one idea in the idea bar (type + Enter). That's the whole loop: capture → evidence → discuss → promote.

🧩 The building blocks: cards

Everything on the board is a card. There are three kinds, and one can grow into another.

Study the full unit

What: A structured research idea with a goal, the evidence that backs it, an analysis plan, a regulatory/operational action, related studies, and its own discussion. This is what you move toward a decision.

How: Click + New Study (top-right) and fill in as much as you have — you can always edit later. Only a title is required.

Question an open ask

What: A quick "what do we want to know?" that isn't a full study yet.

How: Click ❓ Question / Hypothesis, pick "Question", type it, and capture. It appears as a card you can discuss.

Hypothesis a testable belief

What: A statement an experiment or analysis could prove or disprove — a half-step between a question and a study.

How: Same button, pick "Hypothesis". When it has a goal and a strategy, use ▲ Promote to study on the card to turn it into a full study.

✍️ Capturing an idea

Three ways in, from fastest to most complete.

Idea bar fastest

What: A single line at the top of the board for a thought you don't want to lose.

How: Type into "Have an idea or question?…" and press Enter (or click Capture). It's saved instantly as a card you can flesh out later.

Question / Hypothesis quick

What: A small form for an open question or a testable belief, with optional "sparked by" and source report.

How: Click ❓ Question / Hypothesis, choose the kind, and capture.

New Study most complete

What: The full form — title, goal ("what do we believe that an analysis could confirm or refute?"), rationale (what sparked it), source, evidence, related studies, analysis plan, regulatory/operational action, tags, priority, status, owner, stance, confidence.

How: Click + New Study. Fill what you have and Save; every field is editable afterward from the card.

📎 Evidence & links: making a card trustworthy

These turn an opinion into something a reviewer can trace and rank.

Supporting evidence

What: Clickable chips linking to the reports, datasets, and dashboards that back the idea, so anyone can check the claim at its source.

How: In the study form, add one per line as Label | link-or-path | intent (e.g. FORTE trial dashboard | FORTE_TRIAL_DASHBOARD_PLX-120-03.html | support). Each becomes a 📎 chip on the card. Intent (support / contrast / mention) is optional.

Related studies & backlinks

What: Cross-links so connected work threads together instead of scattering. A link is shown both ways: the card you link to gains a "Referenced by" entry pointing back.

How: Tick related studies in the form. On a card, click a ↗ related or ↖ Referenced by chip to jump to that study (it scrolls and flashes).

Tags

What: Short labels (biomarker, BRAF, CNS, resistance…) that group work across lanes.

How: Add comma-separated tags in the form. Click any #tag on a card to instantly filter the board to that tag.

Evidence-stance meter

What: A badge showing where the evidence points — supports / mixed / opposes / untested. It tells a reader at a glance whether the data backs the idea. The board also rolls these up into an overall consensus meter.

How: Set "stance" in the study form.

Confidence grade

What: A high / med / low badge for how sure we are, kept separate from stance so you can be "supports, but low confidence".

How: Set "confidence" in the form.

Video walkthrough

What: An optional embedded Loom / YouTube / Vimeo clip on a card, for a spoken walkthrough of the idea.

How: Paste a share link into the "Video walkthrough" field; it embeds on the card.

💬 Collaborating in real time

Everyone sees the same board, live.

Per-study discussion & @mentions

What: Each card has its own comment thread. Type @name to notify a colleague — they'll see it in their 🔔 inbox (top-right).

How: Open a card's 💬 Discussion, type, and post. Set your name first so replies are attributed.

Board comments & text-highlight

What: Board-wide comments, and the ability to select any text on the page and comment on exactly that phrase (it stays highlighted).

How: Use 💬 Comment on the board (in the ⋯ More menu) for a general note, or highlight text and click the "💬 Add Comment" tag that appears.

Reactions

What: Quick one-click reactions (👍 ✅ 🔬 🎯) on any card, so the team can weigh in without a full comment.

How: Click a reaction chip on a card. Set your name first.

Live presence & jump-to

What: Avatars of who's on the board right now. Click a colleague's avatar to jump to the study they're currently viewing.

How: Automatic once you set your name. Hover an avatar to see the name; click to follow them to their card.

Live multi-user sync

What: Changes anyone makes appear for everyone within a few seconds — no refresh, no save-button races.

How: Automatic. If the top-right shows "Supabase Connected", you're syncing; "Local Mode" means it's saving to your browser only.

🔍 Finding & organizing work

Search

What: Filters the board by any text — title, goal, rationale, owner, evidence label, or tag.

How: Type in the Search box; the board narrows as you type. Clear it to see everything.

Status filters

What: Quick filters by stage: All / Idea / Scoped / Running / Done.

How: Click a status chip. The count next to "All" shows the total.

Grid ↔ Board (Kanban)

What: Two views of the same studies — ▦ Grid (cards) and ☰ Board, a Kanban with idea → scoped → running → done columns.

How: Use the Grid/Board toggle. In Board view, drag a card to a new column to change its status. Click a Kanban card to jump to its full card in Grid.

🧩 Extras

📖 Glossary

What: Plain-language definitions of every target, trial, and platform term used on the board (BRAF, plixorafenib, RANO, RECIST, ORR…).

How: Click 📖 Glossary (top bar). Use its filter box to jump to a term.

📊 Trial dashboard

What: The FORTE / PLX-120-03 (plixorafenib) trial dashboard that the starting studies were seeded from — the evidence source behind the board.

How: Open it from the status panel ("Trial dashboard →") or the evidence chips on the seeded cards.

📎 Attach / import & export

What: Bring in a set of studies from a JSON file (e.g. a seeded starter set), or keep a local backup.

How: Use 📎 Attach / import JSON in the ⋯ More menu. Your work is also saved to your browser as a fallback if you're offline.

Your identity & privacy

What: A display name (not a login) that attributes your studies, comments, and presence.

How: Click 👤 Set your name. The board is keyword-gated and confidential — please don't distribute the link or contents.

The principle: the hub is a shared, cited, living record — capture a finding, attach the evidence that backs it, discuss it in the open, and promote it toward a decision. Nothing is treated as settled until the evidence and the team agree.